Tag Archives: in vitro reconstitution

Congratulations to Yansong Miao on his new paper!

Yansong Miao‘s new paper is out now at The Proceedings of the National Academy of Sciences.  Congratulations to Yansong on his great work!  The abstract is below.  The PDF can be downloaded from PNAS here.

Cell-cycle regulation of formin-mediated actin cable assembly. Miao Y, Wong CC, Mennella V, Michelot A, Agard DA, Holt LJ, Yates JR 3rd, Drubin DG. Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):E4446-E4455. Epub 2013 Oct 16.  PMID: 24133141

Abstract

Assembly of appropriately oriented actin cables nucleated by formin proteins is necessary for many biological processes in diverse eukaryotes. However, compared with knowledge of how nucleation of dendritic actin filament arrays by the actin-related protein-2/3 complex is regulated, the in vivo regulatory mechanisms for actin cable formation are less clear. To gain insights into mechanisms for regulating actin cable assembly, we reconstituted the assembly process in vitro by introducing microspheres functionalized with the C terminus of the budding yeast formin Bni1 into extracts prepared from yeast cells at different cell-cycle stages. EM studies showed that unbranched actin filament bundles were reconstituted successfully in the yeast extracts. Only extracts enriched in the mitotic cyclin Clb2 were competent for actin cable assembly, and cyclin-dependent kinase 1 activity was indispensible. Cyclin-dependent kinase 1 activity also was found to regulate cable assembly in vivo. Here we present evidence that formin cell-cycle regulation is conserved in vertebrates. The use of the cable-reconstitution system to test roles for the key actin-binding proteins tropomyosin, capping protein, and cofilin provided important insights into assembly regulation. Furthermore, using mass spectrometry, we identified components of the actin cables formed in yeast extracts, providing the basis for comprehensive understanding of cable assembly and regulation.

Miao 2013 PNAS Figure 2

Average intensity projections along the z-axis of WT cells stained with Alexa-568 phalloidin to label actin filaments and expressing GFP-Tub1 as a cell-cycle stage indicator, obtained using 3D SIM microscopy.

Microtubules and Mitosis Journal Club on Monday, August 26

For Microtubules and Mitosis Journal Club on August 26, members of the Drubin/Barnes Lab, Eva Nogales Lab, and Ahmet Yildiz Lab will discuss the following paper, selected by Itziar Ibarlucea:

Marking and Measuring Single Microtubules by PRC1 and Kinesin-4. Subramanian R, Ti SC, Tan L, Darst SA, Kapoor TM. Cell. 2013 Jul 18;154(2):377-90. PMID: 23870126.

Subramanian Cell 2013

graphical abstract of the paper

Journal Club on Monday, Feb. 7

For our Journal Club on February 7, Yansong Miao will present the following paper:

Rocket launcher mechanism of collaborative actin assembly defined by single-molecule imaging. Breitsprecher D, Jaiswal R, Bombardier JP, Gould CJ, Gelles J, Goode BL. Science. 2012 Jun 1;336(6085):1164-8. doi: 10.1126/science.1218062. PMID: 22654058

Proposed ‘rocket launcher’ model for mDia1-APC collaboration during actin filament assembly

Journal Club on Monday, June 11

For our next Journal Club, Lillie Cohn will present the following paper:

Reconstitution of clathrin-coated bud and vesicle formation with minimal components.  Dannhauser PN, Ungewickell EJ.  Nat Cell Biol. 2012 Apr 22;14(6):634-9.  PMID: 22522172.

Ultrathin section of H6-ΔANTH-AP180328–896-coated liposomes that were incubated with clathrin at 4 °C (c) or 37 °C